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Yes, separate docker containers can be used to convert files with PHP in LibreOffice. This is a common approach in microservices architectures where each service is packaged in a container and deployed independently. One container could host the PHP code for the file conversion, while another container could host the LibreOffice software and perform the actual conversion. These containers can communicate with each other over the network using APIs or other protocols. By using containers, the deployment, scaling, and maintenance of the system can be simplified and streamlined.