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The procedure for incorporating fingerprint authentication into a Mern Stack web application designed for managing employee attendance involves the following steps:

1. Choose a Fingerprint Recognition System: The system should be compatible with the Mern Stack web application and should have the necessary features for integrating with a web application.

2. Install the Fingerprint SDK: The Fingerprint SDK needs to be installed in the web application for integrating fingerprint authentication.

3. Design User Interface: Design a user interface on the web application where employees can easily authenticate their fingerprints. This could be a login page or a dashboard.

4. Integrate the Fingerprint SDK with the Mern Stack application: The Fingerprint SDK should be integrated with the Mern Stack application for capturing employee fingerprints.

5. Develop Fingerprint Recognition algorithm: Develop an algorithm for the web application to recognize the fingerprints captured by the Fingerprint SDK.

6. Test the Fingerprint Authentication: Test the Fingerprint Authentication system integrated into the web application to ensure its accuracy and efficiency.

7. Deploy the Fingerprint Authentication Feature: After testing and verifying the Fingerprint Authentication feature, deploy it in the Mern Stack web application.

8. Train and Educate Users: Train and educate the employees on the proper use of the Fingerprint Authentication system, this will help reduce any confusion or errors that may arise during use.