Ask Your Question
2

What are the minimum modifications required to incorporate an R script into a Python Poetry/GitHub Actions repository?

asked 2022-01-02 11:00:00 +0000

huitzilopochtli gravatar image

edit retag flag offensive close merge delete

1 Answer

Sort by ยป oldest newest most voted
3

answered 2021-11-14 05:00:00 +0000

qstack gravatar image

To incorporate an R script into a Python Poetry/GitHub Actions repository, the following minimum modifications are required:

  1. Add R to the dependencies of your Python Poetry project. This can be done by adding the following line to your poetry.lock file:
library(r-base)
  1. Install the required R packages using the following command in your workflow file:
Rscript -e "install.packages('package_name')"

Replace package_name with the name of the R package you want to install.

  1. Use the rpy2 package to call R functions from Python. You can install this package by adding the following line to your requirements.txt file:
rpy2==3.4.2
  1. In your Python code, import the rpy2 module and use the robjects subpackage to call R functions. For example:
import rpy2.robjects as robjects

r_sum = robjects.r("function(a, b) {a + b}")

result = r_sum(1, 2)

print(result[0])

In this example, we define an R function that adds two numbers, and call it from Python using the robjects.r method. The result is returned as an R vector, so we need to access the first element of that vector using result[0].

By following these steps, you should be able to incorporate an R script into your Python Poetry/GitHub Actions repository.

edit flag offensive delete link more

Your Answer

Please start posting anonymously - your entry will be published after you log in or create a new account. This space is reserved only for answers. If you would like to engage in a discussion, please instead post a comment under the question or an answer that you would like to discuss

Add Answer


Question Tools

Stats

Asked: 2022-01-02 11:00:00 +0000

Seen: 12 times

Last updated: Nov 14 '21