Ask Your Question
1

How can I obtain the list of files in the directory using nexflow channel?

asked 2021-05-20 11:00:00 +0000

scrum gravatar image

edit retag flag offensive close merge delete

1 Answer

Sort by ยป oldest newest most voted
0

answered 2021-06-20 15:00:00 +0000

pufferfish gravatar image

You can use the FileChannel provided by Nextflow to obtain the list of files in a directory.

Here's an example:

// Define a channel of files in a directory
FileChannel.fromPath('/path/to/directory/*') 

// Iterate over the channel and print the file names
.map{ file ->
    file.name
}

This will return a list of all the file names in the specified directory. You can also modify the fromPath() argument to include a specific extension or a regex pattern to filter the files.

edit flag offensive delete link more

Your Answer

Please start posting anonymously - your entry will be published after you log in or create a new account. This space is reserved only for answers. If you would like to engage in a discussion, please instead post a comment under the question or an answer that you would like to discuss

Add Answer


Question Tools

Stats

Asked: 2021-05-20 11:00:00 +0000

Seen: 11 times

Last updated: Jun 20 '21